Started on   2023-05-29 08:06:19.659500

You are running Rhapsody v0.9.8

Pre-existing working directory detected: /var/www/html/rhapsody/workspace/rhapsody
Pre-existing classifiers found: /var/www/html/rhapsody/workspace/rhapsody/default_classifiers-sklearn_v0.21.3
Pre-existing EVmutation metrics found.
EVmutation folder found: /var/www/html/rhapsody/workspace/rhapsody/EVmutation_mutation_effects
DSSP is installed on the system.
Setup complete.
Imported feature set:
   'wt_PSIC'* 
   'Delta_PSIC'* 
   'SASA'* 
   'ANM_MSF-chain'* 
   'ANM_effectiveness-chain'* 
   'ANM_sensitivity-chain'* 
   'stiffness-chain'* 
   'entropy' 
   'ranked_MI' 
   'BLOSUM'* 
   (* auxiliary feature set)
Submitting query to PolyPhen-2...
Query to PolyPhen-2 started in 38.1s.
PolyPhen-2 is running...
Query to PolyPhen-2 completed in 0.0s.
PolyPhen-2's output parsed.
Sequence-conservation features have been retrieved from PolyPhen-2's output.
Mapping SAVs to PDB structures...
WARNING Unable to recover pickle: File 'UniprotMap-P00533.pkl' not found
Connecting wwPDB FTP server RCSB PDB (USA).
1ivo downloaded (../PDBs/1ivo.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1115 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
1m14 downloaded (../PDBs/1m14.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
1m17 downloaded (../PDBs/1m17.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
312 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
1mox downloaded (../PDBs/1mox.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1097 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
1nql downloaded (../PDBs/1nql.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
660 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
1xkk downloaded (../PDBs/1xkk.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
289 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
1yy9 downloaded (../PDBs/1yy9.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1044 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
1z9i downloaded (../PDBs/1z9i.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
53 atoms and 25 coordinate set(s) were parsed in 0.05s.
Connecting wwPDB FTP server RCSB PDB (USA).
2eb2 downloaded (../PDBs/2eb2.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
305 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2eb3 downloaded (../PDBs/2eb3.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
294 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2gs2 downloaded (../PDBs/2gs2.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
305 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2gs6 downloaded (../PDBs/2gs6.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
316 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2gs7 downloaded (../PDBs/2gs7.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
569 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itn downloaded (../PDBs/2itn.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
304 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2ito downloaded (../PDBs/2ito.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
303 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itp downloaded (../PDBs/2itp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
305 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itq downloaded (../PDBs/2itq.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itt downloaded (../PDBs/2itt.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
302 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itu downloaded (../PDBs/2itu.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
304 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itv downloaded (../PDBs/2itv.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
303 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itw downloaded (../PDBs/2itw.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itx downloaded (../PDBs/2itx.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2ity downloaded (../PDBs/2ity.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2itz downloaded (../PDBs/2itz.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
302 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2j5e downloaded (../PDBs/2j5e.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
309 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2j5f downloaded (../PDBs/2j5f.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
308 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2j6m downloaded (../PDBs/2j6m.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
306 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2jit downloaded (../PDBs/2jit.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
611 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
2jiu downloaded (../PDBs/2jiu.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
612 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2jiv downloaded (../PDBs/2jiv.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
542 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2ks1 downloaded (../PDBs/2ks1.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
88 atoms and 12 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
2m0b downloaded (../PDBs/2m0b.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
88 atoms and 20 coordinate set(s) were parsed in 0.06s.
Connecting wwPDB FTP server RCSB PDB (USA).
2m20 downloaded (../PDBs/2m20.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
120 atoms and 10 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
2n5s downloaded (../PDBs/2n5s.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
54 atoms and 10 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2rf9 downloaded (../PDBs/2rf9.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
602 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2rfd downloaded (../PDBs/2rfd.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
605 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
2rfe downloaded (../PDBs/2rfe.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1149 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
2rgp downloaded (../PDBs/2rgp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
284 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3b2u downloaded (../PDBs/3b2u.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
4984 atoms and 1 coordinate set(s) were parsed in 0.14s.
Connecting wwPDB FTP server RCSB PDB (USA).
3b2v downloaded (../PDBs/3b2v.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
805 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3bel downloaded (../PDBs/3bel.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
280 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
3buo downloaded (../PDBs/3buo.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
630 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3c09 downloaded (../PDBs/3c09.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1175 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
3g5v downloaded (../PDBs/3g5v.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
428 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3g5y downloaded (../PDBs/3g5y.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
439 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3gop downloaded (../PDBs/3gop.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
3gt8 downloaded (../PDBs/3gt8.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1183 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
3ika downloaded (../PDBs/3ika.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
620 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3lzb downloaded (../PDBs/3lzb.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1050 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
3njp downloaded (../PDBs/3njp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1321 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
3ob2 downloaded (../PDBs/3ob2.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3op0 downloaded (../PDBs/3op0.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
660 atoms and 1 coordinate set(s) were parsed in 0.05s.
Connecting wwPDB FTP server RCSB PDB (USA).
3p0y downloaded (../PDBs/3p0y.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
625 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
3pfv downloaded (../PDBs/3pfv.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
633 atoms and 1 coordinate set(s) were parsed in 0.05s.
Connecting wwPDB FTP server RCSB PDB (USA).
3poz downloaded (../PDBs/3poz.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
293 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3qwq downloaded (../PDBs/3qwq.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
713 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
3ug1 downloaded (../PDBs/3ug1.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
296 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
3ug2 downloaded (../PDBs/3ug2.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3vjn downloaded (../PDBs/3vjn.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
297 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
3vjo downloaded (../PDBs/3vjo.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
298 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3vrp downloaded (../PDBs/3vrp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
3vrr downloaded (../PDBs/3vrr.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
3w2o downloaded (../PDBs/3w2o.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
305 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
3w2p downloaded (../PDBs/3w2p.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
308 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
3w2q downloaded (../PDBs/3w2q.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
3w2r downloaded (../PDBs/3w2r.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
297 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
3w2s downloaded (../PDBs/3w2s.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
3w32 downloaded (../PDBs/3w32.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
317 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
3w33 downloaded (../PDBs/3w33.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
297 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4g5j downloaded (../PDBs/4g5j.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4g5p downloaded (../PDBs/4g5p.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
602 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4hjo downloaded (../PDBs/4hjo.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
278 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4i1z downloaded (../PDBs/4i1z.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
287 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4i20 downloaded (../PDBs/4i20.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
287 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
4i21 downloaded (../PDBs/4i21.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
648 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4i22 downloaded (../PDBs/4i22.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
297 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
4i23 downloaded (../PDBs/4i23.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
304 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4i24 downloaded (../PDBs/4i24.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
599 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4jq7 downloaded (../PDBs/4jq7.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
303 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4jq8 downloaded (../PDBs/4jq8.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
303 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4jr3 downloaded (../PDBs/4jr3.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
303 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4jrv downloaded (../PDBs/4jrv.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4krl downloaded (../PDBs/4krl.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
327 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4krm downloaded (../PDBs/4krm.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1922 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
4kro downloaded (../PDBs/4kro.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1110 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
4krp downloaded (../PDBs/4krp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1074 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
4li5 downloaded (../PDBs/4li5.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
306 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4ll0 downloaded (../PDBs/4ll0.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
572 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4lqm downloaded (../PDBs/4lqm.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
305 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4lrm downloaded (../PDBs/4lrm.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1472 atoms and 1 coordinate set(s) were parsed in 0.11s.
Connecting wwPDB FTP server RCSB PDB (USA).
4r3p downloaded (../PDBs/4r3p.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
317 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4r3r downloaded (../PDBs/4r3r.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
316 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4r5s downloaded (../PDBs/4r5s.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
4riw downloaded (../PDBs/4riw.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1134 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
4rix downloaded (../PDBs/4rix.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1134 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
4riy downloaded (../PDBs/4riy.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1134 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
4rj4 downloaded (../PDBs/4rj4.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4rj5 downloaded (../PDBs/4rj5.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
296 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4rj6 downloaded (../PDBs/4rj6.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
297 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4rj7 downloaded (../PDBs/4rj7.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
295 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4rj8 downloaded (../PDBs/4rj8.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
298 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4tks downloaded (../PDBs/4tks.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4uip downloaded (../PDBs/4uip.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
850 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4uv7 downloaded (../PDBs/4uv7.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1030 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
4wd5 downloaded (../PDBs/4wd5.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
611 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4wkq downloaded (../PDBs/4wkq.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
296 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4wrg downloaded (../PDBs/4wrg.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
289 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4zau downloaded (../PDBs/4zau.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
283 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
4zjv downloaded (../PDBs/4zjv.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
647 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
4zse downloaded (../PDBs/4zse.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1208 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
5c8k downloaded (../PDBs/5c8k.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5c8m downloaded (../PDBs/5c8m.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
302 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5c8n downloaded (../PDBs/5c8n.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5cal downloaded (../PDBs/5cal.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5can downloaded (../PDBs/5can.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
301 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5cao downloaded (../PDBs/5cao.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5cap downloaded (../PDBs/5cap.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
303 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5caq downloaded (../PDBs/5caq.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
301 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5cas downloaded (../PDBs/5cas.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5cau downloaded (../PDBs/5cau.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
297 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5cav downloaded (../PDBs/5cav.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
306 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5cnn downloaded (../PDBs/5cnn.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
604 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5cno downloaded (../PDBs/5cno.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
612 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5czh downloaded (../PDBs/5czh.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
320 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5czi downloaded (../PDBs/5czi.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
317 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5d41 downloaded (../PDBs/5d41.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
602 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5edp downloaded (../PDBs/5edp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
295 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5edq downloaded (../PDBs/5edq.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
298 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5edr downloaded (../PDBs/5edr.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5em5 downloaded (../PDBs/5em5.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
298 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5em6 downloaded (../PDBs/5em6.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
301 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5em7 downloaded (../PDBs/5em7.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5em8 downloaded (../PDBs/5em8.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
303 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5fed downloaded (../PDBs/5fed.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
288 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5fee downloaded (../PDBs/5fee.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
287 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5feq downloaded (../PDBs/5feq.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
290 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5gmp downloaded (../PDBs/5gmp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
305 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5gnk downloaded (../PDBs/5gnk.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
277 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5gty downloaded (../PDBs/5gty.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
2384 atoms and 1 coordinate set(s) were parsed in 0.07s.
Connecting wwPDB FTP server RCSB PDB (USA).
5gtz downloaded (../PDBs/5gtz.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
317 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hcx downloaded (../PDBs/5hcx.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
298 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hcy downloaded (../PDBs/5hcy.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
302 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hcz downloaded (../PDBs/5hcz.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hg5 downloaded (../PDBs/5hg5.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
302 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hg7 downloaded (../PDBs/5hg7.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
280 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hg8 downloaded (../PDBs/5hg8.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hg9 downloaded (../PDBs/5hg9.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
280 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hib downloaded (../PDBs/5hib.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
314 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5hic downloaded (../PDBs/5hic.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
302 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5j9y downloaded (../PDBs/5j9y.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5j9z downloaded (../PDBs/5j9z.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
291 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5jeb downloaded (../PDBs/5jeb.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5lv6 downloaded (../PDBs/5lv6.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
88 atoms and 20 coordinate set(s) were parsed in 0.06s.
Connecting wwPDB FTP server RCSB PDB (USA).
5sx4 downloaded (../PDBs/5sx4.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1218 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
5sx5 downloaded (../PDBs/5sx5.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1225 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
5u8l downloaded (../PDBs/5u8l.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
289 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5ug8 downloaded (../PDBs/5ug8.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
280 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5ug9 downloaded (../PDBs/5ug9.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
280 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5uga downloaded (../PDBs/5uga.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
283 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5ugb downloaded (../PDBs/5ugb.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5ugc downloaded (../PDBs/5ugc.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
280 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5uwd downloaded (../PDBs/5uwd.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
271 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5wb7 downloaded (../PDBs/5wb7.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
2186 atoms and 1 coordinate set(s) were parsed in 0.15s.
Connecting wwPDB FTP server RCSB PDB (USA).
5wb8 downloaded (../PDBs/5wb8.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1073 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
5x26 downloaded (../PDBs/5x26.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
302 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5x27 downloaded (../PDBs/5x27.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
302 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5x28 downloaded (../PDBs/5x28.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
310 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5x2a downloaded (../PDBs/5x2a.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1219 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
5x2c downloaded (../PDBs/5x2c.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
607 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5x2f downloaded (../PDBs/5x2f.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1224 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
5x2k downloaded (../PDBs/5x2k.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
314 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5xdk downloaded (../PDBs/5xdk.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
307 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5xdl downloaded (../PDBs/5xdl.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
292 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5xgm downloaded (../PDBs/5xgm.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
288 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5xgn downloaded (../PDBs/5xgn.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
610 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5xwd downloaded (../PDBs/5xwd.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
838 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
5y25 downloaded (../PDBs/5y25.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
292 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5y9t downloaded (../PDBs/5y9t.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
5yu9 downloaded (../PDBs/5yu9.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1203 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
5zto downloaded (../PDBs/5zto.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
294 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
5zwj downloaded (../PDBs/5zwj.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
267 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6aru downloaded (../PDBs/6aru.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1031 atoms and 1 coordinate set(s) were parsed in 0.07s.
Connecting wwPDB FTP server RCSB PDB (USA).
6b3s downloaded (../PDBs/6b3s.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
2478 atoms and 1 coordinate set(s) were parsed in 0.07s.
Connecting wwPDB FTP server RCSB PDB (USA).
6d8e downloaded (../PDBs/6d8e.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
304 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
6duk downloaded (../PDBs/6duk.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1800 atoms and 1 coordinate set(s) were parsed in 0.06s.
Connecting wwPDB FTP server RCSB PDB (USA).
6jrj downloaded (../PDBs/6jrj.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
288 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6jrk downloaded (../PDBs/6jrk.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
283 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6jrx downloaded (../PDBs/6jrx.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6jwl downloaded (../PDBs/6jwl.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
319 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6jx0 downloaded (../PDBs/6jx0.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
289 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6jx4 downloaded (../PDBs/6jx4.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
315 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6jxt downloaded (../PDBs/6jxt.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
283 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6jz0 downloaded (../PDBs/6jz0.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
311 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6lub downloaded (../PDBs/6lub.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
301 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
6lud downloaded (../PDBs/6lud.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
310 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
6p1d downloaded (../PDBs/6p1d.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1196 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6p1l downloaded (../PDBs/6p1l.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1156 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6p8q downloaded (../PDBs/6p8q.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1221 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6s89 downloaded (../PDBs/6s89.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
310 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
6s8a downloaded (../PDBs/6s8a.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
313 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
6s9b downloaded (../PDBs/6s9b.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
291 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
6s9c downloaded (../PDBs/6s9c.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
301 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
6s9d downloaded (../PDBs/6s9d.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
300 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
6tfu downloaded (../PDBs/6tfu.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
527 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6tfv downloaded (../PDBs/6tfv.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
537 atoms and 1 coordinate set(s) were parsed in 0.05s.
Connecting wwPDB FTP server RCSB PDB (USA).
6tfw downloaded (../PDBs/6tfw.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
530 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6tfy downloaded (../PDBs/6tfy.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
530 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6tfz downloaded (../PDBs/6tfz.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
535 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6tg0 downloaded (../PDBs/6tg0.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
543 atoms and 1 coordinate set(s) were parsed in 0.05s.
Connecting wwPDB FTP server RCSB PDB (USA).
6tg1 downloaded (../PDBs/6tg1.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
539 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6v5n downloaded (../PDBs/6v5n.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1213 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6v5p downloaded (../PDBs/6v5p.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1216 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6v66 downloaded (../PDBs/6v66.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1229 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6v6k downloaded (../PDBs/6v6k.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
2454 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
6v6o downloaded (../PDBs/6v6o.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
2427 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
6vh4 downloaded (../PDBs/6vh4.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
295 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
6vhn downloaded (../PDBs/6vhn.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
286 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
6vhp downloaded (../PDBs/6vhp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
308 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
6wa2 downloaded (../PDBs/6wa2.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1230 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6wak downloaded (../PDBs/6wak.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1209 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6wxn downloaded (../PDBs/6wxn.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1179 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6xl4 downloaded (../PDBs/6xl4.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1187 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6z4b downloaded (../PDBs/6z4b.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
534 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
6z4d downloaded (../PDBs/6z4d.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
539 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
7a2a downloaded (../PDBs/7a2a.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
534 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
7a6i downloaded (../PDBs/7a6i.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
282 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
7a6j downloaded (../PDBs/7a6j.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
541 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
7a6k downloaded (../PDBs/7a6k.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1043 atoms and 1 coordinate set(s) were parsed in 0.07s.
Connecting wwPDB FTP server RCSB PDB (USA).
7aei downloaded (../PDBs/7aei.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
315 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
7aem downloaded (../PDBs/7aem.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
312 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
7b85 downloaded (../PDBs/7b85.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
312 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
7er2 downloaded (../PDBs/7er2.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
292 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
7jxi downloaded (../PDBs/7jxi.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1136 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
7jxk downloaded (../PDBs/7jxk.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1748 atoms and 1 coordinate set(s) were parsed in 0.13s.
Connecting wwPDB FTP server RCSB PDB (USA).
7jxl downloaded (../PDBs/7jxl.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1163 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
7jxm downloaded (../PDBs/7jxm.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1159 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
7jxp downloaded (../PDBs/7jxp.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1783 atoms and 1 coordinate set(s) were parsed in 0.13s.
Connecting wwPDB FTP server RCSB PDB (USA).
7jxq downloaded (../PDBs/7jxq.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1189 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
7jxw downloaded (../PDBs/7jxw.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1159 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
7k1h downloaded (../PDBs/7k1h.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1743 atoms and 1 coordinate set(s) were parsed in 0.12s.
Connecting wwPDB FTP server RCSB PDB (USA).
7k1i downloaded (../PDBs/7k1i.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
288 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
7kxz downloaded (../PDBs/7kxz.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
299 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
7ky0 downloaded (../PDBs/7ky0.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1156 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
7len downloaded (../PDBs/7len.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1093 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
7lfr downloaded (../PDBs/7lfr.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1093 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
7lfs downloaded (../PDBs/7lfs.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
2184 atoms and 1 coordinate set(s) were parsed in 0.06s.
Connecting wwPDB FTP server RCSB PDB (USA).
7lg8 downloaded (../PDBs/7lg8.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1100 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
7lgs downloaded (../PDBs/7lgs.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1131 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
7ltx downloaded (../PDBs/7ltx.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1170 atoms and 1 coordinate set(s) were parsed in 0.08s.
Connecting wwPDB FTP server RCSB PDB (USA).
7om4 downloaded (../PDBs/7om4.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
791 atoms and 1 coordinate set(s) were parsed in 0.06s.
Connecting wwPDB FTP server RCSB PDB (USA).
7oxb downloaded (../PDBs/7oxb.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
305 atoms and 1 coordinate set(s) were parsed in 0.01s.
Connecting wwPDB FTP server RCSB PDB (USA).
7si1 downloaded (../PDBs/7si1.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
301 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
7syd downloaded (../PDBs/7syd.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1321 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
7sye downloaded (../PDBs/7sye.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1322 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
7sz0 downloaded (../PDBs/7sz0.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1320 atoms and 1 coordinate set(s) were parsed in 0.09s.
Connecting wwPDB FTP server RCSB PDB (USA).
7sz1 downloaded (../PDBs/7sz1.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1322 atoms and 1 coordinate set(s) were parsed in 0.07s.
Connecting wwPDB FTP server RCSB PDB (USA).
7sz5 downloaded (../PDBs/7sz5.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1214 atoms and 1 coordinate set(s) were parsed in 0.04s.
Connecting wwPDB FTP server RCSB PDB (USA).
7sz7 downloaded (../PDBs/7sz7.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
1328 atoms and 1 coordinate set(s) were parsed in 0.05s.
Connecting wwPDB FTP server RCSB PDB (USA).
7tvd downloaded (../PDBs/7tvd.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
292 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
7vra downloaded (../PDBs/7vra.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
289 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
7vre downloaded (../PDBs/7vre.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
312 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
8a27 downloaded (../PDBs/8a27.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
269 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
8a2a downloaded (../PDBs/8a2a.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
306 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
8a2b downloaded (../PDBs/8a2b.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
272 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
8a2d downloaded (../PDBs/8a2d.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
281 atoms and 1 coordinate set(s) were parsed in 0.03s.
Connecting wwPDB FTP server RCSB PDB (USA).
8d73 downloaded (../PDBs/8d73.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
618 atoms and 1 coordinate set(s) were parsed in 0.02s.
Connecting wwPDB FTP server RCSB PDB (USA).
8d76 downloaded (../PDBs/8d76.pdb.gz)
PDB download via FTP completed (1 downloaded, 0 failed).
625 atoms and 1 coordinate set(s) were parsed in 0.02s.
Chain A in 7SYD was aligned in 0.4s.
Pickle 'UniprotMap-P00533.pkl' saved.
Pickle 'UniprotMap-P01112.pkl' recovered.
Pickle 'UniprotMap-P01112.pkl' saved.
2 out of 2 SAVs have been mapped to PDB in 80.9s.
Computing structural and dynamical features from PDB structures...
Pickle 'PDBfeatures-4Q21.pkl' recovered.
Pickle 'PDBfeatures-4Q21.pkl' saved.
WARNING Unable to recover pickle: File 'PDBfeatures-7SYD.pkl' not found
PDB file is found in the local folder (/var/www/.../7syd.pdb.gz).
10208 atoms and 1 coordinate set(s) were parsed in 0.16s.
Running DSSP...
DSSP finished in 4.8s.
Kirchhoff was built in 0.03s.
612 modes were calculated in 0.31s.
Hessian was built in 0.51s.
1833 modes were calculated in 0.90s.
Calculating covariance matrix
Covariance matrix calculated in 0.2s.
Calculating perturbation response
Perturbation response matrix calculated in 0.0s.
Perturbation response scanning completed in 0.2s.
Calculating stiffness matrix.
Stiffness matrix calculated in 5.98s.
The range of effective force constant is: 3.235050499189262 to 24.45103115811909.
Pickle 'PDBfeatures-7SYD.pkl' saved.
PDB features have been computed in 13.4s.
Computing sequence properties from Pfam domains...
Pickle 'UniprotMap-P00533.pkl' recovered.
Retrieving Pfam search results: https://pfam.xfam.org/protein/P00533?output=xml
WARNING Unable to compute Pfam features: Pfam search timed out or failed to parse results XML, check URL: https://pfam.xfam.org/protein/P00533?output=xml
Pickle 'UniprotMap-P00533.pkl' saved.
Pickle 'UniprotMap-P01112.pkl' recovered.
WARNING Unable to compute Pfam features: No Pfam domain for resid 99.
Pickle 'UniprotMap-P01112.pkl' saved.
SAVs have been mapped on Pfam domains and sequence properties have been computed in 63.8s.
Random Forest classifier imported in 0.4s.
WARNING No predictions could be computed.
0 predictions computed in 0.0s.
Random Forest classifier imported in 0.4s.
2 predictions computed in 0.5s.
Recovering EVmutation data...
EVmutation scores recovered in 0.1s.

Completed on 2023-05-29 08:09:40.129165